Directory mrUtilities/File/mlrImage/

Lines of Code

Developers

Most Recent Commits

justin 2011-11-21 12:27 Rev.: 2382

Fixing small bug with mlrVol that got introduced that kept controls from working properly since the callback was getting called with a callbackArg

1 lines of code changed in 1 file:

• mrUtilities/File/mlrImage: mlrVol.m (+1 -1)

justin 2011-11-20 01:16 Rev.: 2381

mlrVol now doesn't close mrParamsDialog unless it has it open. Also pass in parameter to set initial toggle overlay state. mrParamsDialog needed a small fix so that the okButton callback could have a callbackArg.

14 lines of code changed in 1 file:

• mrUtilities/File/mlrImage: mlrVol.m (+14 -6)

justin 2011-11-18 15:29 Rev.: 2374

Allows specifying a range to rescale the output values (i.e. data values can be linearly scaled to be between 0 and 256)

11 lines of code changed in 2 files:

• mrUtilities/File/mlrImage: mlrImageLoad.m (+9 -4), mlrImageParseArgs.m (+2 -2)

justin 2011-11-15 20:43 Rev.: 2372

Pulls out a function that converts an mlrImage header to a nifti header and gives mlrImageLoad a parameter to load as a nifti

77 lines of code changed in 3 files:

• mrUtilities/File/mlrImage: mlrImageGetNiftiHeader.m (new 61), mlrImageHeaderSave.m (+2 -22), mlrImageLoad.m (+14 -3)

justin 2011-11-08 23:18 Rev.: 2369

mlrImage now converts now double data input into double (because non-double data was not displaying correctly)

1 lines of code changed in 1 file:

• mrUtilities/File/mlrImage: mlrImageParseArgs.m (+1 -1)

justin 2011-10-27 22:59 Rev.: 2366

Fixing so that clicking on the images keep you at the same volume number

1 lines of code changed in 1 file:

• mrUtilities/File/mlrImage: mlrVol.m (+1 -1)

justin 2011-10-19 12:19 Rev.: 2363

Adding ability to select which receiver you want to load or inf for all receivers - for Varian/Agilant fid files

1 lines of code changed in 1 file:

• mrUtilities/File/mlrImage: mlrImageParseArgs.m (+1 -1)

justin 2011-10-19 11:39 Rev.: 2362

Fixing miscapitalization of mlrnum2str

2 lines of code changed in 1 file:

• mrUtilities/File/mlrImage: mlrVol.m (+2 -2)

justin 2011-10-11 15:56 Rev.: 2360

Adds ability to display a list of all the manual alignment commands that have been applied to the alignment

136 lines of code changed in 1 file:

• mrUtilities/File/mlrImage: mlrVol.m (+136 -3)

justin 2011-10-04 10:27 Rev.: 2358

mlrVol now clips the brightest / darkest points in an image (by default set to the top/bottom 0.2% of pixels, but can be adjusted in the GUI). This helps for display of images that have a stray bright pixel. The readout value when you mouse over points will still display the unclipped value.

getfidk gives a better warning for old files that did not have epi processing run

fid2xform has a few fixes for old data. For one, the epi is not flipped relative to the 2D/3D images, so we don't need to do that. Also, the X dimension is reversed in the old data, so needed to compensate for that

48 lines of code changed in 1 file:

• mrUtilities/File/mlrImage: mlrVol.m (+48 -21)

justin 2011-10-02 22:18 Rev.: 2352

Fixing alignment xform to go from to to, just like mrAlign and removing the system xform.
Also fixed small bug in which a stray axis occasionally showed up in another figure

72 lines of code changed in 1 file:

• mrUtilities/File/mlrImage: mlrVol.m (+72 -79)

justin 2011-10-02 16:04 Rev.: 2351

Doing identity alignment by aligning center of volumes.
reslice image gets correct pixdim

36 lines of code changed in 2 files:

• mrUtilities/File/mlrImage: mlrImageReslice.m (+1 -1), mlrVol.m (+35 -4)

justin 2011-10-01 09:52 Rev.: 2350

Fixes pixdim and dim when reorienting volume

8 lines of code changed in 1 file:

• mrUtilities/File/mlrImage: mlrImageOrient.m (+8)

justin 2011-09-30 22:22 Rev.: 2349

Fixes non-updating overlays when displayInterpolated is not set

4 lines of code changed in 1 file:

• mrUtilities/File/mlrImage: mlrVol.m (+4 -1)

justin 2011-09-30 22:06 Rev.: 2348

Fixed overlay not always redrawing properly.
Also, after image xform the current display coordinate now gets xformed too so that the image stays in the same place

15 lines of code changed in 2 files:

• mrUtilities/File/mlrImage: mlrImageXform.m (+4 -2), mlrVol.m (+11 -5)

justin 2011-09-30 17:20 Rev.: 2347

Adding ability to clear xforms

14 lines of code changed in 1 file:

• mrUtilities/File/mlrImage: mlrImageHeaderEdit.m (+14 -4)

justin 2011-09-30 15:41 Rev.: 2346

Minor fixes to deal with bad fid files

10 lines of code changed in 2 files:

• mrUtilities/File/mlrImage: mlrImageLoad.m (+1 -1), mlrVol.m (+9 -1)

justin 2011-09-30 15:17 Rev.: 2345

Fixing xform for 8 channel data which apparently is flipped in the x dimension relative to the 4 channel data. Minor fixes here and there to mlrVol and mlrImageXform

4 lines of code changed in 2 files:

• mrUtilities/File/mlrImage: mlrImageXform.m (+3 -1), mlrVol.m (+1 -1)

justin 2011-09-30 14:09 Rev.: 2344

Adding ability to edit mlrImage headers using an mrParamsDialog - this can be accessed via mlrVol

156 lines of code changed in 3 files:

• mrUtilities/File/mlrImage: mlrImageGetAxisLabels.m (+6), mlrImageHeaderEdit.m (new 121), mlrVol.m (+29)

justin 2011-09-29 21:15 Rev.: 2343

Fixing pixdim xform to be correct for mlrImageXform. Also, can do xform of pixdim even if qform does not exist.
Identity xform for mlrVOl takes voxel size into account

25 lines of code changed in 2 files:

• mrUtilities/File/mlrImage: mlrImageXform.m (+18 -16), mlrVol.m (+7 -1)

(63 more)