[root]/mrLoadRet/Analysis/AverageTSeries

| Author | Changes | Lines of Code | Lines per Change |
|---|---|---|---|
| Totals | 26 (100.0%) | 891 (100.0%) | 34.2 |
| justin | 17 (65.4%) | 692 (77.7%) | 40.7 |
| eli | 3 (11.5%) | 186 (20.9%) | 62.0 |
| shani | 3 (11.5%) | 8 (0.9%) | 2.6 |
| david | 3 (11.5%) | 5 (0.6%) | 1.6 |
Keeps track of junked frames
14 lines of code changed in 1 file:
Small fix to make description match the scans that were actually averaged
1 lines of code changed in 1 file:
description parameter was getting passed through when you were caling averageTSeries through the command line
5 lines of code changed in 1 file:
minor: changes accepted number of input arguments
1 lines of code changed in 1 file:
fixing -kb flag
0 lines of code changed in 2 files:
bug fix
5 lines of code changed in 1 file:
fixed small error
2 lines of code changed in 1 file:
allow for different volume sizes to be averaged together
1 lines of code changed in 1 file:
Minor change: newView does not need to have parameter 'Volume', so all calls were changed to be v = newView
1 lines of code changed in 1 file:
Removed unnecessary xform calls
1 lines of code changed in 1 file:
*** empty log message ***
1 lines of code changed in 1 file:
Uses scan2scan to do warping. Also passes along vol2mag and vol2tal.
21 lines of code changed in 1 file:
Added parameters to make scripting easier, and congruent with concatTSeries and eventRelated (i.e. justGetParams, defaultParams and scanNums optional arguments)
38 lines of code changed in 2 files:
got rid of slice loop b/c it screwed up warping when the files have different alignments
74 lines of code changed in 1 file:
process each slice separately to avoid memory problems for huge datasets
fixed bug with negative shift (now use circshift)
47 lines of code changed in 1 file:
only apply transformation if baseXform and scanXform are different
65 lines of code changed in 1 file:
*** empty log message ***
2 lines of code changed in 1 file:
change getpref/setpref to mrGetPref/mrSetPref
add edit preferences menu
2 lines of code changed in 1 file:
added x/y flip to warp the time series appropriately and original file names
5 lines of code changed in 1 file:
Modified Files:
checkAlignment.m computeAlignment.m
intensityContrastCorrection.m interpVolume.m mrAlign.m
mrAlignGUI.m refreshAlignDisplay.m
use shiftOriginXform instead of ALIGN.origin to specify nifti origin
fix coarse alignment bug
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Modified Files:
mrGlobals.m mrLoadRetVersion.m
mrLoadRetVersion returns also expected matlab version, used for warning when starting mrLoadRet or mrAlign
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averageTSeries.m
use shiftOriginXform to specify nifti origin
1 lines of code changed in 1 file:
(1 more)