January 2008 Commit Log

Number of Commits:
49
Number of Active Developers:
5
eli 2008-01-30 06:52 Rev.: 906

also remove junk frames

5 lines of code changed in 1 file:

eli 2008-01-30 06:36 Rev.: 905

added trend line to timecourse plot

9 lines of code changed in 1 file:

shani 2008-01-29 06:52 Rev.: 904

Added 'round' to getting the surface base coordinates

1 lines of code changed in 1 file:

eli 2008-01-26 06:38 Rev.: 903

for some reason, need to keep axis on while scrolling in through the anatomical volume

1 lines of code changed in 1 file:

justin 2008-01-25 08:26 Rev.: 902

old code used to update basemin and basemax on the gui if you had no bases loaded, that is no longer necessary (and caused an error)

0 lines of code changed in 1 file:

eli 2008-01-24 01:25 Rev.: 901

fixed a bug in which X and Y were flipped for patches made with mrFlatMesh

8 lines of code changed in 1 file:

shani 2008-01-22 05:59 Rev.: 900

bug fix

1 lines of code changed in 1 file:

shani 2008-01-22 05:16 Rev.: 899

added option to set 'scansformcode' which is same as 'sformcode'
also added option to set 'roisformcode'

14 lines of code changed in 1 file:

shani 2008-01-22 05:11 Rev.: 898


Added base2roi, and fixed roi2mag, roi2tal, roixform - now all parallel with scan and base.

167 lines of code changed in 1 file:

eli 2008-01-19 01:36 Rev.: 897

fixed a 1-off bug in setting the vertex number when flattening with surfrelax

1 lines of code changed in 1 file:

shani 2008-01-18 04:58 Rev.: 896


had missed a place to change the name to sform code the first time!

1 lines of code changed in 1 file:

shani 2008-01-18 04:57 Rev.: 895


changed name from xformCode to sformCode for consistency with base and scan

1 lines of code changed in 1 file:

shani 2008-01-18 04:56 Rev.: 894

changed name from xformCode to sformCode for consistency with scan and base

2 lines of code changed in 1 file:

shani 2008-01-18 02:44 Rev.: 893

added fields to allow for talairach

2 lines of code changed in 1 file:

shani 2008-01-18 02:43 Rev.: 892

Added fields for allowing talairach

16 lines of code changed in 1 file:

eli 2008-01-18 00:55 Rev.: 891

justin fixed a small bug in getScanAndGroup when s is empty

3 lines of code changed in 1 file:

eli 2008-01-18 00:27 Rev.: 890

changed && to & in base2scan switch

1 lines of code changed in 1 file:

shani 2008-01-17 06:54 Rev.: 889

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1 lines of code changed in 1 file:

shani 2008-01-17 06:48 Rev.: 888

added scan2scan

131 lines of code changed in 1 file:

justin 2008-01-17 06:26 Rev.: 887

use keyboard for mrErrorDlg in non-verbose mode since that doesn't give you an error that looks like mrErrorDlg caused the problem...

2 lines of code changed in 1 file:

justin 2008-01-17 06:21 Rev.: 886

talairach field becomes invisible if you don't have talairach coords

5 lines of code changed in 1 file:

justin 2008-01-17 05:49 Rev.: 885

allow default argument where scan is specified as []

3 lines of code changed in 1 file:

justin 2008-01-17 05:48 Rev.: 884

use the viewGet--base2scan to compute overlays

17 lines of code changed in 4 files:

justin 2008-01-17 05:47 Rev.: 883

added vol2mag and vol2tal fields to info display

11 lines of code changed in 2 files:

justin 2008-01-17 05:47 Rev.: 882

split roiInfo as its own function away from mrLoadRetGUI

62 lines of code changed in 1 file:

shani 2008-01-17 03:34 Rev.: 881

Added Talairach capability

31 lines of code changed in 1 file:

shani 2008-01-17 03:34 Rev.: 880

Added base2scan and subfunction oneTimeWarning

96 lines of code changed in 1 file:

eli 2008-01-16 00:23 Rev.: 879

rounded start coords

2 lines of code changed in 1 file:

david 2008-01-15 05:31 Rev.: 878

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10 lines of code changed in 1 file:

eli 2008-01-15 04:47 Rev.: 877

added a missing viewGet call to get the current base anatomy

1 lines of code changed in 1 file:

david 2008-01-15 04:06 Rev.: 876

Modified Files: mrAlignGUI.fig mrAlignGUI.m
Added "Save Aligned & Resampled Source"

33 lines of code changed in 2 files:

david 2008-01-15 03:26

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33 lines of code changed in 4 files:

david 2008-01-15 00:58 Rev.: 873

Modified Files: mrAlignGUI.fig mrAlignGUI.m
First step of adding code to save aligned (warped and resampled) volumes.

8 lines of code changed in 2 files:

david 2008-01-15 00:51 Rev.: 872

Modified Files: mrAlignGUI.m
Changed mrAlign to work with either single-file or two-file nifti
Modified Files: cbiWriteNiftiHeader.m
Fixed bug to write nifti header to single-file nifti without obliterating the image data.

8 lines of code changed in 2 files:

david 2008-01-15 00:50 Rev.: 871

Modified Files: mrAlignGUI.m
Changed mrAlign to work with either single-file or two-file nifti

114 lines of code changed in 1 file:

shani 2008-01-12 01:35 Rev.: 870

bug fix

2 lines of code changed in 1 file:

shani 2008-01-11 23:54 Rev.: 869

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9 lines of code changed in 1 file:

shani 2008-01-11 23:39 Rev.: 868

fixed the code to deal with case if sform hasn't been set for the scan

9 lines of code changed in 1 file:

shani 2008-01-11 02:30 Rev.: 867

Added capability for tailarach transformations: vol2mag and vol2tal

5 lines of code changed in 1 file:

shani 2008-01-11 02:15 Rev.: 866

Added capability for talairach transformations

12 lines of code changed in 1 file:

shani 2008-01-11 02:14 Rev.: 865

Added fields for computing talairach transformation: vol2tal and vol2mag

10 lines of code changed in 2 files:

shani 2008-01-11 02:13 Rev.: 864

Changes reflect added Talairach capability.
Added: scanVol2Tal, baseVol2Tal, scanVol2Mag, baseVol2Mag: xform matrices
that take the aligned volume to talairach or magnet space, respectively.
Added: scan2mag, scan2tal, base2mag, base2tal: xform matrices that take
the scan (or the base) to volume coordinates in magnet space or talairach space.
Note that what previously was called scanXform is now called scan2mag: the xform
for the scan to the volume in magnet space. scanXform is still allowed, for
backward compatibility, but should not be used going forward. Instead, the more
descriptive scan2mag or base2mag should be used to make it clear whether
magnet space or talairach space is being used. For more details see the
comments in the text of the code (e.g. for details about when the
shiftOriginXform is included)

278 lines of code changed in 1 file:

shani 2008-01-11 02:08 Rev.: 863

Added options to allow for Talairach alignment.
Added viewSet(view,'scanVol2Tal'), viewSet(view,'baseVol2Tal'), viewSet(view,'scanVol2mag'), viewSet(view,'baseVol2mag')
These set the xform for the aligned volume, to talairach and to magnet space respectively
Also distinguished between viewSet for scanXform vs scanSform, that scanXform assumes sform_code = 1 (eg. magnet rather
than Talairach space); and similar for baseXform vs baseSform. Note that scanXform and baseXform are the older way of
referring the s-form, before talairach capabilities had been added, and so are not specific about the underlying space
and should no longer be used. They were left in for backward compatbility.

149 lines of code changed in 1 file:

justin 2008-01-11 00:00 Rev.: 862

more comments

11 lines of code changed in 1 file:

eli 2008-01-09 06:37 Rev.: 861

added missing semicolon

2 lines of code changed in 1 file:

eli 2008-01-09 03:36 Rev.: 860

gray out distance calculation

3 lines of code changed in 1 file:

farshadm 2008-01-05 07:00 Rev.: 859

fixed bug running eventRelated on non-concatenated data

12 lines of code changed in 1 file:

justin 2008-01-05 02:46 Rev.: 858

just testing ideas for how to deal with tal xforms. no change.

3 lines of code changed in 1 file:

justin 2008-01-05 02:45 Rev.: 857

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3 lines of code changed in 1 file:

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