September 2007 Commit Log

Number of Commits:

120

Number of Active Developers:

3

justin 2007-09-30 08:30 #120 Rev.: 638

minor fix for an extreme case in which x coordinate is way at border

2 lines of code changed in 1 file:

• mrLoadRet/GUI: refreshMLRDisplay.m (+2 -2)

justin 2007-09-30 07:40 #119 Rev.: 637

sped up drawing of perimeters by using matrix operations--perimeters that took 30 seconds now take 30ms!
drawROI draws lines while you are waiting for the roi to cache
baseInfo displays information about flats

131 lines of code changed in 5 files:

• mrLoadRet/File: baseInfo.m (new 46), loadFlatOFF.m (+1 -1)
• mrLoadRet/GUI: mrLoadRetGUI.m (+5 -17), refreshMLRDisplay.m (+73 -29)
• mrLoadRet/ROI: drawROI.m (+6 -1)

justin 2007-09-29 04:54 #118 Rev.: 636

no change

1 lines of code changed in 1 file:

• mrLoadRet/ROI: drawROI.m (+1 -1)

justin 2007-09-29 04:54 #117 Rev.: 635

displays floating point values correctly

1 lines of code changed in 1 file:

• mrLoadRet/GUI: mrInterrogator.m (+1 -1)

justin 2007-09-29 04:54 #116 Rev.: 634

minor file dialog changes

5 lines of code changed in 1 file:

• mrLoadRet/File: loadFlatOFF.m (+5 -5)

farshadm 2007-09-29 02:20 #115 Rev.: 633

glm applys the same filter to the design matrix that was applied to data before concatenation

10 lines of code changed in 3 files:

• mrLoadRet/Analysis/EventRelated: eventRelatedGlm.m (+3 -2), hrfDiffGamma.m (+1 -1), makeglm.m (+6)

eli 2007-09-29 02:07 #114 Rev.: 632

use linear interpolation on the coords

16 lines of code changed in 1 file:

• mrLoadRet/File: loadFlatOFF.m (+16 -8)

farshadm 2007-09-29 00:57 #113 Rev.: 631

renamed myhighpass to eventRelatedHighpass

3 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: eventRelatedHighpass.m (+3 -3)

farshadm 2007-09-29 00:56 #112 Rev.: 630

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2 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: eventRelatedGlm.m (+2 -1)

justin 2007-09-28 11:42 #111 Rev.: 629

save as for anatomies
mrDispOverlay correctly puts overlays into other than scan 1

47 lines of code changed in 4 files:

• mrLoadRet/Analysis/QuickAnalysis: mrDispOverlay.m (+1 -1)
• mrLoadRet/File: saveAnat.m (+34 -14)
• mrLoadRet/GUI: mrLoadRetGUI.fig (changed), mrLoadRetGUI.m (+12 -1)

eli 2007-09-28 11:10 #110 Rev.: 628

changed to using 'griddata' for interpolating the 3d surface coords onto the 2d flatmap.

66 lines of code changed in 1 file:

• mrLoadRet/File: loadFlatOFF.m (+66 -50)

justin 2007-09-28 07:11 #109 Rev.: 627

set verbose level to 0

1 lines of code changed in 1 file:

• mrUtilities/MatlabUtilities: evalargs.m (+1 -1)

justin 2007-09-28 07:11 #108 Rev.: 626

minor

1 lines of code changed in 1 file:

• mrLoadRet/GUI: refreshMLRDisplay.m (+1 -1)

justin 2007-09-28 07:11 #107 Rev.: 625

nothing changed

1 lines of code changed in 1 file:

• mrLoadRet/File: saveAnalysis.m (+1 -2)

justin 2007-09-28 07:10 #106 Rev.: 624

trying to handle putting overlays into scans that don't begin with 1

1 lines of code changed in 1 file:

• mrLoadRet/Analysis/QuickAnalysis: mrDispOverlay.m (+1 -1)

justin 2007-09-28 07:10 #105 Rev.: 623

check for mgl/task in path

3 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: getStimvol.m (+3)

justin 2007-09-28 05:41 #104 Rev.: 622

check for existence of roiCache before clearing

5 lines of code changed in 1 file:

• mrLoadRet/View: viewSet.m (+5 -3)

eli 2007-09-28 05:14 #103 Rev.: 621

changed load flat to load OFF surfaces

3 lines of code changed in 1 file:

• mrLoadRet/GUI: mrLoadRetGUI.m (+3 -1)

justin 2007-09-28 04:10 #102 Rev.: 620

made the use of "roipoly" an option for drawROI. If you use getpts instead of roipoly it doesn't draw the lines between points but can be substantially faster on slices in which you already have a bunch of ROIs drawn (essentially the roipoly function has to keep redrawing a set of lines which makes it painfuly slow)

33 lines of code changed in 3 files:

• mrLoadRet/GUI: refreshMLRDisplay.m (+11 -5)
• mrLoadRet/ROI: drawROI.m (+14 -2)
• mrUtilities/MatlabUtilities: mrEditPrefs.m (+8)

justin 2007-09-28 01:21 #101 Rev.: 619

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18 lines of code changed in 1 file:

• mrLoadRet/GUI: refreshMLRDisplay.m (+18 -17)

justin 2007-09-27 23:47 #100 Rev.: 618

It is *very* important to clear the axis before drawing in refreshMLRDisplay (without the cla it was taking literally 10 minutes to update the screen for flat patches)--not sure exactly why it takes that long, but adding the cla fixed it--thought I put this in before when I optimized refreshMLRDisplay but it got lost somehow.

7 lines of code changed in 1 file:

• mrLoadRet/GUI: refreshMLRDisplay.m (+7 -1)

farshadm 2007-09-27 23:24 #99 Rev.: 617

eventRelatedGlm acts similarly to eventRelated wrt justGetParams and defaultParams

17 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: eventRelatedGlm.m (+17 -3)

justin 2007-09-27 12:32 #98 Rev.: 616

Caching of the roi perimeter for faster roi drawing
Check marks on ROI show menu items
removed some superfluous files

66 lines of code changed in 5 files:

• mrLoadRet/Edit: editOverlayGUI.fig (del), editOverlayGUI.m (del)
• mrLoadRet/GUI: mlrGuiSet.m (+15 -1), refreshMLRDisplay.m (+50 -33)
• mrLoadRet/View: viewSet.m (+1 -1)

justin 2007-09-27 07:01 #97 Rev.: 615

check for inner/outer coords so that it doesn't barf on old flat maps

5 lines of code changed in 1 file:

• mrLoadRet/View: viewGet.m (+5 -3)

justin 2007-09-27 06:54 #96 Rev.: 614

corticalDepth slider for flat patches

156 lines of code changed in 6 files:

• mrLoadRet/GUI: mlrGuiSet.m (+25 -1), mrLoadRetGUI.fig (changed), mrLoadRetGUI.m (+67 -37), refreshMLRDisplay.m (+3 -5)
• mrLoadRet/View: viewGet.m (+53 -3), viewSet.m (+8)

eli 2007-09-27 06:23 #95 Rev.: 613

more code clean up
added help

109 lines of code changed in 1 file:

• mrLoadRet/File: loadFlatOFF.m (+109 -27)

justin 2007-09-27 05:46 #94 Rev.: 612

changes to allow using another overlay as alpha map

66 lines of code changed in 4 files:

• mrLoadRet/GUI: mrLoadRetGUI.m (+2 -2), refreshMLRDisplay.m (+35 -3)
• mrLoadRet/View: isoverlay.m (+6 -2), viewGet.m (+23)

justin 2007-09-27 05:46 #93 Rev.: 611

filepath changes

1 lines of code changed in 1 file:

• mrLoadRet/File: loadFlatOFF.m (+1 -1)

justin 2007-09-27 05:45 #92 Rev.: 610

you can now use another overlay as your alpha map

10 lines of code changed in 1 file:

• mrLoadRet/Edit: editOverlayGUImrParams.m (+10 -1)

eli 2007-09-27 04:22 #91 Rev.: 609

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0 lines of code changed in 1 file:

• mrUtilities/ImageProcessing: corrDn.mexmaci (new)

eli 2007-09-27 04:17 #90 Rev.: 608

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30 lines of code changed in 1 file:

• mrLoadRet/File: loadFlatOFF.m (+30 -39)

eli 2007-09-27 03:38 #89 Rev.: 607

removed all of the viewer calls

215 lines of code changed in 1 file:

• mrLoadRet/File: loadFlatOFF.m (+215 -397)

justin 2007-09-26 23:55 #88 Rev.: 606

added edit/overlay/info

26 lines of code changed in 2 files:

• mrLoadRet/GUI: mrLoadRetGUI.fig (changed), mrLoadRetGUI.m (+26 -1)

justin 2007-09-26 23:28 #87 Rev.: 605

mrWarnDlg prints warning doesn't dump stack

1 lines of code changed in 1 file:

• mrUtilities/MatlabUtilities: mrWarnDlg.m (+1 -1)

justin 2007-09-26 23:27 #86 Rev.: 604

sliceOrientation is also called baseSliceIndex so allowed for that parameter to be passed into viewSet

1 lines of code changed in 1 file:

• mrLoadRet/View: viewSet.m (+1 -1)

justin 2007-09-26 23:26 #85 Rev.: 603

broke out this function so that it could be reused

9 lines of code changed in 1 file:

• mrLoadRet/ROI: findROI.m (+9 -10)

justin 2007-09-26 23:26 #84 Rev.: 602

allowed to pass in single map and assign to multiple scans

7 lines of code changed in 1 file:

• mrLoadRet/Analysis/QuickAnalysis: mrDispOverlay.m (+7)

justin 2007-09-26 23:26 #83 Rev.: 601

changed some comments

5 lines of code changed in 2 files:

• mrLoadRet/Analysis/EventRelated: eventRelated.m (+1 -1), makescm.m (+4 -3)

justin 2007-09-26 01:16 #82

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51 lines of code changed in 2 files:

• mrLoadRet/ROI: findROI.m (new 50)

justin 2007-09-26 01:16 #81 Rev.: 598

added findROI

11 lines of code changed in 2 files:

• mrLoadRet/GUI: mrLoadRetGUI.fig (changed), mrLoadRetGUI.m (+11 -34)

justin 2007-09-26 00:23 #80 Rev.: 597

handles empty lists properly

14 lines of code changed in 1 file:

• mrUtilities/MatlabUtilities: putOnTopOfList.m (+14)

justin 2007-09-26 00:23 #79 Rev.: 596

only allow findROI feature on base anatomies that are not coordMapped

7 lines of code changed in 1 file:

• mrLoadRet/GUI: mrLoadRetGUI.m (+7 -2)

justin 2007-09-26 00:22 #78 Rev.: 595

just added some comments to clean things up

14 lines of code changed in 1 file:

• mrLoadRet/Analysis: defaultReconcileParams.m (+14)

justin 2007-09-26 00:21 #77 Rev.: 594

checks for empty ROI

6 lines of code changed in 2 files:

• mrLoadRet/ROI: getROICoordinates.m (+4 -2), importROI.m (+2)

justin 2007-09-26 00:21 #76 Rev.: 593

can return a base, which is useful for saving the base structure

16 lines of code changed in 1 file:

• mrLoadRet/View: viewGet.m (+16)

justin 2007-09-26 00:20 #75 Rev.: 592

load/save anatomy now saves an associated base structure so that
it handles flat anatomies

28 lines of code changed in 2 files:

• mrLoadRet/File: loadAnat.m (+12), saveAnat.m (+16 -8)

justin 2007-09-25 05:32 #74 Rev.: 591

change made previously was incorrect-tseriesFilename was getting sorted incorrectly

4 lines of code changed in 1 file:

• mrLoadRet/Analysis: defaultReconcileParams.m (+4 -3)

justin 2007-09-25 05:03 #73 Rev.: 590

draws ROIs correctly for baseCoordMap'd flat maps.

13 lines of code changed in 1 file:

• mrLoadRet/GUI: refreshMLRDisplay.m (+13 -3)

eli 2007-09-25 04:46 #72 Rev.: 589

round baseCoords in call to getROIBaseCoords. needed for flat patches created from surfaces that have non-integer coordinates

1 lines of code changed in 1 file:

• mrLoadRet/GUI: refreshMLRDisplay.m (+1 -1)

justin 2007-09-25 04:27 #71 Rev.: 588

minor

7 lines of code changed in 2 files:

• mrLoadRet/Analysis: defaultReconcileParams.m (-2)
• mrLoadRet/File: groupInfo.m (+7 -2)

justin 2007-09-25 04:26 #70 Rev.: 587

better handling of reconcile

6 lines of code changed in 2 files:

• mrLoadRet/Analysis/QuickAnalysis: mrDispOverlay.m (+5 -3), quickReconcile.m (+1)

justin 2007-09-25 04:25 #69 Rev.: 586

viewSet to set analysis info for edit/analysis menu item

46 lines of code changed in 1 file:

• mrLoadRet/View: viewSet.m (+46 -3)

justin 2007-09-25 04:24 #68 Rev.: 585

removed these GUIs since they are now done with mrParamsDialog

0 lines of code changed in 4 files:

• mrLoadRet/Edit: editAnalysisGUI.fig (del), editAnalysisGUI.m (del), editRoiGUI.fig (del), editRoiGUI.m (del)

justin 2007-09-25 04:24 #67 Rev.: 584

beefed up edit/analysis

19 lines of code changed in 1 file:

• mrLoadRet/GUI: mrLoadRetGUI.m (+19 -1)

justin 2007-09-25 02:27 #66 Rev.: 583

better handling of mismatch of scans and analyses

19 lines of code changed in 1 file:

• mrLoadRet/Analysis: defaultReconcileParams.m (+19 -4)

justin 2007-09-25 02:26 #65 Rev.: 582

minor: more specific info on overlay mismatch displayed

5 lines of code changed in 1 file:

• mrLoadRet/View: viewSet.m (+5 -1)

justin 2007-09-25 02:25 #64 Rev.: 581

minor: print out mrDefautlsFilename correctly

1 lines of code changed in 1 file:

• mrLoadRet/GUI: mrLoadRetGUI.m (+1 -1)

justin 2007-09-25 01:41 #63 Rev.: 580

find ROI function in Edit/ROI/Info

35 lines of code changed in 1 file:

• mrLoadRet/GUI: mrLoadRetGUI.m (+35 -1)

justin 2007-09-25 00:57 #62 Rev.: 579

Analysis/Info menu item: added code to gracefully handle the case when the GUI function does not exist (this is the case for some old analyses that had a typo in the GUI function name)

11 lines of code changed in 1 file:

• mrLoadRet/GUI: mrLoadRetGUI.m (+11)

eli 2007-09-25 00:41 #61 Rev.: 578

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1 lines of code changed in 1 file:

• mrLoadRet/Analysis/MotionComp: motionComp.m (+1 -1)

eli 2007-09-24 23:24 #60 Rev.: 577

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5 lines of code changed in 1 file:

• mrLoadRet/File: loadFlatOFF.m (+5 -2)

eli 2007-09-24 23:12 #59 Rev.: 576

loads a flat patch directly from an .off file generated from SurfRelax
also does some checking with the GM and WM surfaces

483 lines of code changed in 1 file:

• mrLoadRet/File: loadFlatOFF.m (new 483)

eli 2007-09-24 23:07 #58 Rev.: 575

don't upsample across slices if there is only one slice (as in the case of a flat patch)

114 lines of code changed in 1 file:

• mrUtilities/ImageProcessing: mrUpSample.m (+114 -38)

eli 2007-09-24 23:05 #57 Rev.: 574

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162 lines of code changed in 2 files:

• mrLoadRet/Analysis/MotionComp: motionComp.m (+157 -156), motionCompReconcileParams.m (+5 -1)

justin 2007-09-22 03:35 #56 Rev.: 573

minor: captilization change

1 lines of code changed in 1 file:

• mrUtilities/MatlabUtilities: mrDefaultsFilename.m (+1 -1)

justin 2007-09-22 03:34 #55 Rev.: 572

allow for an override of mrDefaults filename by using setpref

50 lines of code changed in 5 files:

• mrUtilities/MatlabUtilities: loadMrDefaults.m (+6 -2), mrDefaultsFilename.m (new 29), mrGetPref.m (+7 -2), mrSetPref.m (+3), saveMrDefaults.m (+5 -1)

justin 2007-09-21 03:52 #54 Rev.: 571

minor changes: deleteScans can be called without creating a view
groupInfo is a bit smarter about being called from a directory not the home directory

29 lines of code changed in 3 files:

• mrLoadRet/File: deleteScans.m (+25 -3), groupInfo.m (+2 -2)
• mrLoadRet/View: viewGet.m (+2)

justin 2007-09-21 03:20 #53 Rev.: 570

changed name of mrDeleteScans to deleteScans

62 lines of code changed in 3 files:

• mrLoadRet/File: deleteScans.m (new 61), mrDeleteScans.m (del)
• mrLoadRet/GUI: mrLoadRetGUI.m (+1 -1)

justin 2007-09-20 08:14 #52 Rev.: 569

minor bug fix, seems that contingentValue could be an array, so used isequal instead of == to avoid a crash

1 lines of code changed in 1 file:

• mrUtilities/MatlabUtilities: mrParamsDefault.m (+1 -1)

justin 2007-09-20 08:13 #51 Rev.: 568

phaseNum and segmentNum passed in arguments were being set to taskNum--fixed

2 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: getStimvol.m (+2 -2)

justin 2007-09-20 08:12 #50 Rev.: 567

broke out mrDeleteScans so it can be called from command line
minor changes to groupInfo

87 lines of code changed in 2 files:

• mrLoadRet/File: groupInfo.m (+31 -7), mrDeleteScans.m (new 56)

justin 2007-09-20 08:11 #49 Rev.: 566

delete many ROIs
broke our mrDeleteScan so it can be called from the command line

31 lines of code changed in 2 files:

• mrLoadRet/GUI: mrLoadRetGUI.fig (changed), mrLoadRetGUI.m (+31 -23)

justin 2007-09-18 22:57 #48 Rev.: 565

groupInfo with no arguments returns session info

22 lines of code changed in 1 file:

• mrLoadRet/File: groupInfo.m (+22 -16)

justin 2007-09-18 22:56 #47 Rev.: 564

viewGet session information

16 lines of code changed in 1 file:

• mrLoadRet/View: viewGet.m (+16 -1)

justin 2007-09-18 06:45 #46 Rev.: 563

minor: check for no scans in group

4 lines of code changed in 1 file:

• mrLoadRet/GUI: mrLoadRetGUI.m (+4)

justin 2007-09-18 06:16 #45 Rev.: 562

minor: warning about how to import ROI's form mrLoadRet-3.1

2 lines of code changed in 1 file:

• mrLoadRet/ROI: importROI.m (+2)

justin 2007-09-18 06:15 #44 Rev.: 561

minor: check for valid session

4 lines of code changed in 1 file:

• mrLoadRet: mrGlobals.m (+4)

justin 2007-09-18 06:14 #43 Rev.: 560

minor: display scan number along with description

1 lines of code changed in 1 file:

• mrLoadRet/GUI: selectScans.m (+1 -1)

justin 2007-09-18 06:13 #42 Rev.: 559

minor: check for valid scan number

5 lines of code changed in 1 file:

• mrLoadRet/File: scanInfo.m (+5)

justin 2007-09-18 06:12 #41 Rev.: 558

eventRelated allows you to get just params--useful for scripting

24 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: eventRelated.m (+24 -3)

justin 2007-09-18 06:12 #40 Rev.: 557

concatTSeries allows you to get just params--useful for scripting

25 lines of code changed in 1 file:

• mrLoadRet/Analysis/ConcatTSeries: concatTSeries.m (+25 -5)

justin 2007-09-18 06:11 #39 Rev.: 556

minor:newView checks for valid MLR.session
viewSet allows setting curGroup with the groupName

10 lines of code changed in 2 files:

• mrLoadRet/View: newView.m (+1), viewSet.m (+9)

farshadm 2007-09-15 05:46 #38 Rev.: 555

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4 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: getStimvol.m (+4 -4)

farshadm 2007-09-15 01:41 #37 Rev.: 554

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1 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: eventRelatedGlm.m (+1 -1)

farshadm 2007-09-15 01:01 #36 Rev.: 553

gethdr adds variance of hrf components

22 lines of code changed in 4 files:

• mrLoadRet/Analysis/EventRelated: eventRelatedGlm.m (+7 -2), getStimvol.m (+4 -4), gethdr.m (+1 -1), glmContrastPlot.m (+10 -3)

justin 2007-09-14 22:26 #35 Rev.: 552

minor: default return arg

1 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: loadScan.m (+1 -1)

farshadm 2007-09-14 06:57 #34 Rev.: 551

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177 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: glmContrastPlot.m (new 177)

farshadm 2007-09-14 06:25 #33 Rev.: 550

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9 lines of code changed in 3 files:

• mrLoadRet/Analysis/EventRelated: eventRelatedGlm.m (+1 -1), eventRelatedGlmGUI.m (+7 -1), eventRelatedPlot.m (+1 -1)

justin 2007-09-14 00:20 #32 Rev.: 549

minor: check if analysis exists before trying to display info on it from Edit/Analysis/Info

3 lines of code changed in 1 file:

• mrLoadRet/GUI: mrLoadRetGUI.m (+3)

justin 2007-09-14 00:19 #31 Rev.: 548

minor: check that with preprocess run scripts that the script exists before trying to run

7 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: eventRelatedPreProcess.m (+7 -2)

farshadm 2007-09-13 03:04 #30 Rev.: 547

glm for contrast creats amplitude maps

39 lines of code changed in 2 files:

• mrLoadRet/Analysis/EventRelated: eventRelatedGlm.m (+39 -4), getGlmContrast.m (-2)

justin 2007-09-13 00:01 #29 Rev.: 546

minor fix to handle if a second mrParamsDialog gets created from a first one

5 lines of code changed in 1 file:

• mrUtilities/MatlabUtilities: mrParamsDialog.m (+5)

justin 2007-09-12 23:59 #28 Rev.: 545

Analysis/Info

70 lines of code changed in 2 files:

• mrLoadRet/GUI: mrLoadRetGUI.fig (changed), mrLoadRetGUI.m (+70 -1)

justin 2007-09-12 22:23 #27 Rev.: 544

Removed ROI/Show/Coordinates since it was redundant with Edit/ROI/Info

73 lines of code changed in 2 files:

• mrLoadRet/GUI: mrLoadRetGUI.fig (changed), mrLoadRetGUI.m (+73 -82)

justin 2007-09-12 22:19 #26 Rev.: 543

minor. set axis to tight

1 lines of code changed in 1 file:

• mrLoadRet/Plot: mrEpiMovie.m (+1 -1)

justin 2007-09-12 21:59 #25 Rev.: 542

minor

1 lines of code changed in 1 file:

• mrLoadRet/GUI: mrLoadRetGUI.m (+1 -1)

justin 2007-09-12 05:40 #24 Rev.: 541

More intelligent display

25 lines of code changed in 1 file:

• mrLoadRet/File: scanInfo.m (+25 -7)

justin 2007-09-12 05:39 #23 Rev.: 540

Some more info available with Edit/ROI/Info

81 lines of code changed in 1 file:

• mrLoadRet/GUI: mrLoadRetGUI.m (+81 -3)

farshadm 2007-09-12 05:27 #22 Rev.: 539

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135 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: getGlmContrast.m (new 135)

farshadm 2007-09-12 05:02 #21 Rev.: 538

eventRelatedGlm can specify a contrast (linear combination of
explanatory variables)

50 lines of code changed in 2 files:

• mrLoadRet/Analysis/EventRelated: eventRelatedGlm.m (+44 -4), gethdr.m (+6 -6)

justin 2007-09-12 04:05 #20 Rev.: 537

change to help string roiCache size default = 50

1 lines of code changed in 1 file:

• mrUtilities/MatlabUtilities: mrEditPrefs.m (+1 -1)

justin 2007-09-12 03:52 #19 Rev.: 536

changed defalt roi cache size to 50

7 lines of code changed in 1 file:

• mrUtilities/MatlabUtilities: loadMrDefaults.m (+7 -2)

justin 2007-09-12 03:47 #18 Rev.: 535

name of ROI is guaranteed not to be the same as an existing one, which happened with the old code if you deleted an ROi

9 lines of code changed in 1 file:

• mrLoadRet/ROI: newROI.m (+9 -1)

justin 2007-09-12 03:46 #17 Rev.: 534

roi caching is now on an roi basis (before it was for all rois at a time--which was slow when you had a lot of rois loaded and you wanted to edit/add a new one)

11 lines of code changed in 1 file:

• mrLoadRet/GUI: refreshMLRDisplay.m (+11 -17)

justin 2007-09-12 03:45 #16 Rev.: 533

for large epi files, loadAnat now loads volume by volume to avoid out of memory

15 lines of code changed in 1 file:

• mrLoadRet/File: loadAnat.m (+15 -2)

justin 2007-09-12 03:44 #15 Rev.: 532

roi caching added the ability to cache single rois rather than all of the rois at once. this is useful since if you have a lot of rois you shouldn't have to recompute all of the rois just the one you have changed. newView can be called with out a type

41 lines of code changed in 3 files:

• mrLoadRet/View: newView.m (+4), viewGet.m (+22 -3), viewSet.m (+15 -3)

farshadm 2007-09-12 00:35 #14 Rev.: 531

eventRelatedGlmGUI: a contrast (linear combination of explanatory variables)
can be specified.

6 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: eventRelatedGlmGUI.m (+6 -1)

farshadm 2007-09-12 00:34 #13 Rev.: 530

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4 lines of code changed in 1 file:

• mrAlign: intensityContrastCorrection.m (+4)

justin 2007-09-07 11:45 #12 Rev.: 529

dataTYPES can be an array so had to fix line 82

1 lines of code changed in 1 file:

• mrLoadRet/File: mr3to4.m (+1 -1)

justin 2007-09-07 04:40 #11 Rev.: 528

number of slice dimensions has to be set to how many slices were loaded--this bug was introduced yesterday

4 lines of code changed in 2 files:

• mrLoadRet/Analysis/EventRelated: loadScan.m (+3)
• mrLoadRet/Plot: mrSpikeDetector.m (+1)

eli 2007-09-07 03:33 #10 Rev.: 527

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2 lines of code changed in 1 file:

• mrLoadRet/View: isoverlay.m (+2 -1)

eli 2007-09-07 03:33 #9 Rev.: 526

default 'colormapType' changed to 'normal'

20 lines of code changed in 1 file:

• mrLoadRet/View: isoverlay.m (+20 -19)

justin 2007-09-07 01:56 #8 Rev.: 525

added xform to returned structure

2 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: loadScan.m (+2 -4)

eli 2007-09-06 04:05 #7 Rev.: 524

changed editOverlayMenuItem_Callback to use editOverlayGUImrParams instead editOverlayGUI, which was created by GUIDE.
additional features include flipping and rotating the colormap.

5 lines of code changed in 1 file:

• mrLoadRet/GUI: mrLoadRetGUI.m (+5 -4)

eli 2007-09-06 03:59 #6 Rev.: 523

Initial upload. This GUI replaces the editOverlayGUI created by GUIDE. Additional features include flipping and rotating the colormap. I've also added a few additional cmaps that may be useful.

375 lines of code changed in 1 file:

• mrLoadRet/Edit: editOverlayGUImrParams.m (new 375)

justin 2007-09-05 23:39 #5 Rev.: 522

Make sure to load preferences if they are not already (otherwise the preferences get overwritten in some circumstances)

6 lines of code changed in 2 files:

• mrUtilities/MatlabUtilities: mrEditPrefs.m (+1 -1), mrSetPref.m (+5)

justin 2007-09-05 23:39 #4 Rev.: 521

After isview is called, needed to reinstall view into MLR variable so that it would correctly be considered a view by isview. this bug only happened if the view was created as the first one.

4 lines of code changed in 1 file:

• mrLoadRet/View: newView.m (+4)

justin 2007-09-05 23:37 #3 Rev.: 520

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7 lines of code changed in 2 files:

• mrLoadRet/Analysis/ConcatTSeries: concatTSeries.m (+5 -5)
• mrLoadRet/File: saveTSeries.m (+2)

justin 2007-09-05 23:37 #2 Rev.: 519

Added some new fields that loadScan gives, also now it just prints out the TR for 3D scans--since that should be fixed in the reconstruction code and old datasets should set the parameter by hand using setFramePeriod

20 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: loadScan.m (+20 -4)

eli 2007-09-03 09:00 #1 Rev.: 518

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25 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: eventRelatedPlot.m (+25 -25)

August 2007 »